3 Three PhD Fully Funded Positions in Microbiology and Bioinformatics at Radboud University in The Netherlands

 3 Three PhD Fully Funded Positions in Microbiology and Bioinformatics at Radboud University in The Netherlands

3 Three PhD Fully Funded Positions in Microbiology and Bioinformatics at Radboud University in The Netherlands: Get your PhD in the most amazing Microbiology department out there:

The first one. If you like bioinformatics, and wanna explore more about virus-archaea interactions, PhD Candidate in Bioinformatics: Are you fascinated by microbiology and the microbial interactions that have shaped our planet and all life upon it? And would you like to delve into metagenomic datasets to uncover the complexities of host-virus interactions and their role in Ecology and Evolution? Become a part of our team as a PhD candidate and dive into the unexplored microbial world using bioinformatics!

Asgard archaea, are recognised as the closest prokaryotic relatives of eukaryotes. Metagenomic recovery and analysis of Asgard genomes have allowed us to identify proteins within this group of prokaryotes that were previously considered exclusive eukaryotic signature proteins (ESPs). Despite recent descriptions of viruses and other mobile genetic elements (MGEs) infecting Asgard archaea, the impact of these interactions on eukaryogenesis and the development of ESPs remains largely unexplored.

In this PhD project, you will delve into the influence of MGEs on the evolution of Asgard archaea using forefront bioinformatics. Your work will include developing innovative computational methods to extract viral genomes from metagenomic datasets, creating novel approaches to associate viruses with their hosts, and establishing precise and reproducible methods for annotating viral genomes. During this project, you will join a dynamic and diverse research team in the Department of Microbiology at the Radboud Institute for Biological and Environmental Sciences (RIBES), where you will have opportunities for collaboration and to provide viral information in different scientific contexts and contribute with a teaching workload up to 10% of your working time.

Profile

• You hold a Master’s degree in Microbiology, Biology, Bioinformatics, Computer Science, or a related field.
• You are proficient in English and have good communication skills.You are enthusiastic, curious and open-minded.
• You have at least basic programming skills in languages such as Python, Bash, or R.
• You can work independently as well as in a team.
• You are enthusiastic, curious, and open-minded.
• Prior experience in microbiology research and environmental metagenomics is advantageous.

We are

The Radboud Institute for Biological and Environmental Sciences (RIBES) aims to perform world-leading research in order to understand the response of the natural environment to human impact. Researchers within RIBES are working on the overarching research mission ‘Towards Healthy Ecosystems’, with four focus areas: I. Macronutrients and chemicals of emerging concern, II. Physical conditions: understanding responses and adaptation mechanism to stressors, III.

Biodiversity decline and recovery of ecological communities, and IV. Mitigation of greenhouse gasses. With this knowledge, RIBES contributes to mitigating ecosystem degradation and finding solutions to restore the natural environment. Research at RIBES encompasses three major groups of organisms, namely microorganisms, plants and animals, and spans nearly all levels of biological organisation. The institute is organised in four departments: Ecology, Physiology, Environmental Science, and Microbiology.

The Microbiology Department comprises an enthusiastic and devoted team of scholars that closely collaborate in a flat organisational structure. Harmonious and productive collaboration and synergy are key to our success. At our faculty, institute, and department, we have state-of-the-art equipment for sequencing and data analysis, light and electron microscopy, a large bioreactor facility as well as infrastructure for anaerobic microbiology, and facilities for biochemical, molecular and physiological work.

Our mission is to conduct research at the forefront of microbial ecology and physiology with the main aim of understanding the diversity of micro-organisms responsible for the biogeochemical cycling of nitrogen and carbon (methane). In close collaboration with other RIBES groups and external partners, we pay special attention to host-microbe interactions.

In addition, in close collaboration with stakeholders and industrial and other partners, we collaborate on the development of microbial applications in sustainable drinking water production and wastewater treatment systems in order to remove nitrogen, methane and micropollutants (contaminants of emerging concern, or CECs). We focus on four research themes: 1. Nitrogen cycle microbiology, 2. Carbon/methane cycle microbiology, 3. Host-microbe interactions, and 4. Bioremediation. We contribute to this collaboration on these four themes through our expertise in metabolomics, cell biology and biochemistry, environmental microbiology, biotechnology, microbial physiology and bioinformatics.

Radboud University; We offer

• Employment for 0.8 (5 year contract) – 1.0 FTE (4 year contract).
• The gross starting salary amounts to €2,770 per month based on a 38-hour working week, and will increase to €3,539 in the fourth year (salary scale P).
• You will receive 8% holiday allowance and 8.3% end-of-year bonus.
• You will be employed for an initial period of 18 months, after which your performance will be evaluated. If the evaluation is positive, the contract will be extended by 2.5 years (4 year contract) or 3.5 years (5 year contract).
• You will be able to use our Dual Career and Family Care Services. Our Dual Career and Family Care Officer can assist you with family-related support, help your partner or spouse prepare for the local labour market, provide customized support in their search for employment and help your family settle in Nijmegen.
• Working for us means getting extra days off. In case of full-time employment, you can choose between 30 or 41 days of annual leave instead of the legally allotted 20.

Additional employment conditions; Work and science require good employment practices. This is reflected in Radboud University’s primary and secondary employment conditions. You can make arrangements for the best possible work-life balance with flexible working hours, various leave arrangements and working from home. You are also able to compose part of your employment conditions yourself, for example, exchange income for extra leave days and receive a reimbursement for your sports subscription. And of course, we offer a good pension plan. You are given plenty of room and responsibility to develop your talents and realise your ambitions. Therefore, we provide various training and development schemes.

Would you like more information? For questions about the position, please contact Pedro Leão, Assistant Professor, at 06 41 74 87 11 or pedro.leao@ru.nl.

Practical information and applying

You can apply until 1 April 2024, exclusively using the button below. Kindly address your application to Pedro Leão. Please fill in the application form and attach the following documents:

• A letter of motivation.
• Your CV.

The first round of interviews will take place on Monday 8 April. You would preferably begin employment as soon as possible. It offers a rough outline of what you can expect during the application process, how we handle your personal data and how we deal with internal and external candidates.

Apply now Application deadline 01 April 2024

2 – If you are more into nitrogen-cycling microorganisms… we’ve got you! Join Professor Van Kessel’s group in exploring their impact on recirculating aquaculture systems (RAS); PhD Candidate in Microbiology:

Are you fascinated by how micro-organisms interact with each other and with eukaryotic hosts? Are you interested in the development of methods to identify and obtain novel micro-organisms in culture? Then join the Department of Microbiology as a PhD candidate!

Recirculating aquaculture systems (RAS) are becoming more and more important for the sustainable cultivation of aquatic animals. A major challenge in these systems is the accumulation of nitrogenous animal waste products in the water (e.g. ammonium from fish waste), which can lead to decreased welfare. These nitrogenous compounds can be removed from the water by specialised biofilters which harbour nitrogen-cycling micro-organisms that convert these compounds into di-nitrogen gas. In addition to this, we discovered that fish have symbiotic nitrogen-cycle organisms in their gills which also convert excreted ammonium directly into di-nitrogen gas, thereby functioning as a natural, built-in biofilter.

In this PhD project, you will develop new methods to selectively study and isolate these nitrogen-cycling micro-organisms. You will study these micro-organisms in the biofilters as well as in the fish gills to, on the one hand, study their physiology and interactions within the biofilter system, and, on the other hand, investigate the precise nature of the interactions of the symbionts with their fish host, and of the nitrogen-cycling micro-organisms among each other. All in all, this project will increase our understanding of this unique host-microbe interaction and contribute to the development of a more sustainable aquaculture. Your teaching load may be up to 10% of your working time.

Profile

• You are enthusiastic, curious and open-minded.
• You have a keen interest in host-microbe and microbe-microbe interactions.
• You hold a Master’s degree in Microbiology, Biology, Molecular Life Sciences, or a related field.
• Prior experience in microbiology research and bioinformatics is advantageous.
• You are proficient in English and have good communication skills.
• You can work independently as well as in a team.
• You have statistical and data analysis skills.

We are

The Radboud Institute for Biological and Environmental Sciences (RIBES) aims to perform world-leading research in order to understand the response of the natural environment to human impact. Researchers within RIBES are working on the overarching research mission ‘Towards Healthy Ecosystems’, with four focus areas: I. Macronutrients and chemicals of emerging concern, II. Physical conditions: understanding responses and adaptation mechanism to stressors, III.

 Biodiversity decline and recovery of ecological communities, and IV. Mitigation of greenhouse gasses. With this knowledge, RIBES contributes to mitigating ecosystem degradation and finding solutions to restore the natural environment. Research at RIBES encompasses three major groups of organisms, namely micro-organisms, plants and animals, and spans nearly all levels of biological organisation. The institute is organised in four departments: Ecology, Physiology, Environmental Science, and Microbiology.

The Microbiology department comprises an enthusiastic and devoted team of academics who closely collaborate in a flat organisational structure. Harmonious and productive collaboration and synergy are key to our success. We have state-of-the-art equipment for sequencing and data analysis, light and electron microscopy, a large bioreactor facility as well as infrastructure for anaerobic microbiology, and facilities for biochemical, molecular and physiological work. Our mission is to conduct research at the forefront of microbial ecology and physiology with the main aim of understanding the diversity of micro-organisms responsible for the biogeochemical cycling of nitrogen and carbon (methane).

In close collaboration with other RIBES groups and external partners, we pay special attention to host-microbe interactions. In addition, in close collaboration with stakeholders and industrial and other partners, we collaborate on the development of microbial applications in sustainable drinking water production and wastewater treatment systems in order to remove nitrogen, methane and micropollutants (CEC). We focus on four research themes:

1. Nitrogen cycle microbiology

2. Carbon/methane cycle microbiology

3. Host-microbe interactions

4. Bioremediation

We contribute to the collaboration on these four themes through our expertise in metabolomics, cell biology and biochemistry, environmental microbiology, biotechnology, microbial physiology, and bioinformatics.

Radboud University; At Radboud University, we aim to make an impact through our work. We achieve this by conducting groundbreaking research, providing high-quality education, offering excellent support, and fostering collaborations within and outside the university. In doing so, we contribute indispensably to a healthy, free world with equal opportunities for all.

To accomplish this, we need even more colleagues who, based on their expertise, are willing to search for answers. We advocate for an inclusive community and welcome employees with diverse backgrounds, cultures, and perspectives. Will you also contribute to making the world a little better? You have a part to play.

We offer

• It concerns an employment for 1.0 FTE.
• The gross starting salary amounts to €2,541 per month based on a 38-hour working week, and will increase to €3,247 in the fourth year  (salary scale P).
• You will receive 8% holiday allowance and 8.3% end-of-year bonus.
• You will be employed for an initial period of 18 months, after which your performance will be evaluated. If the evaluation is positive, the contract will be extended by 2.5 years (4 year contract).
• You will be able to use our Dual Career and Family Care Services. Our Dual Career and Family Care Officer can assist you with family-related support, help your partner or spouse prepare for the local labour market, provide customized support in their search for employment and help your family settle in Nijmegen.
• Working for us means getting extra days off. In case of full-time employment, you can choose between 30 or 41 days of annual leave instead of the legally allotted 20.

Additional employment conditions; Work and science require good employment practices. This is reflected in Radboud University’s primary and secondary employment conditions. You can make arrangements for the best possible work-life balance with flexible working hours, various leave arrangements and working from home. You are also able to compose part of your employment conditions yourself, for example, exchange income for extra leave days and receive a reimbursement for your sports subscription. And of course, we offer a good pension plan. You are given plenty of room and responsibility to develop your talents and realise your ambitions. Therefore, we provide various training and development schemes.

Would you like more information? For questions about the position, please contact Maartje van Kessel, Assistant Professor at  maartje.vankessel@science.ru.nl.

Practical information and applying; You can apply until 31 March 2024, exclusively using the button below. Kindly address your application to Maartje van Kessel. Please fill in the application form and attach the following documents:

• A letter of motivation.
• Your CV.

The first round of interviews will take place on Friday 5 April. You would preferably begin employment as soon as possible.  We can imagine you’re curious about our application procedure. It offers a rough outline of what you can expect during the application process, how we handle your personal data and how we deal with internal and external candidates.

Apply now Application deadline 31 March 2024

3 – If you enjoy studying the better half of Prokaryotes, you can also join Prof. group and explore methanotrophic archaea’s capacity to turn methane into electricity! PhD Candidate in Microbial Physiology:

Are you fascinated by microbiology and how microbes can be used to combat climate change? We are seeking a PhD candidate interested in the microbial physiology of anaerobic methanotrophic archaea and their capacity to turn the greenhouse gas methane into electricity. Join us in this exciting project to explore these fascinating microorganisms!

Microorganisms are key drivers in the mitigation of greenhouse gas emissions. Anaerobic methanotrophic archaea form a biological filter in aquatic environments, limiting the amount of methane emitted into the atmosphere. Their unique capabilities offer promising applications in biotechnology, enabling the mitigation of methane emissions from municipal and industrial waste streams. Recently, we have discovered that they can turn methane into electricity when they are cultivated on electrodes.

In this PhD project, you will investigate the microbial physiology of anaerobic methanotrophic archaea cultivated on bio-electrodes. You will discover which enzymes are involved in the electricity production and how these archaea interact with other community members. Furthermore, you will cultivate novel methanotrophs on bio-electrodes to describe their electrochemical and physiological properties.

During this project, you will join a dynamic and diverse research team within the Department of Microbiology at the Radboud Institute for Biological and Environmental Sciences (RIBES). Throughout this project, you will have the opportunity to collaborate with experts across various scientific domains and contribute up to 10% of your working time to teaching responsibilities.

Profile

• You have an MSc degree in life sciences (biology, microbiology, biotechnology, or a related area) with a focus on microbiology.
• You are proficient in English, both written and spoken.
• You have the mindset required to develop into an independent scientist (growth mindset).
• Knowledge of basic microbiological methods is essential.
• Experience in anaerobic microbiology or with bioreactor techniques is considered an advantage.

We are; The Radboud Institute for Biological and Environmental Sciences (RIBES) aims to perform world-leading research to understand the response of the natural environment to human impact. Researchers within RIBES are working on the overarching research mission “Towards Healthy Ecosystems”, with four focus areas: I. Macronutrients and chemicals of emerging concern, II. Physical conditions: understanding responses and adaptation mechanism to stressors, III.

Biodiversity decline and recovery of ecological communities, and IV. Mitigation of greenhouse gasses. With this knowledge, RIBES contributes to mitigating ecosystem degradation and finding solutions to restore the natural environment. Research at RIBES encompasses three major groups of organisms – microorganisms, plants, and animals – and spans nearly all levels of biological organization. The institute is organized in four departments: Ecology, Physiology, Environmental Science, and Microbiology.

The Microbiology department comprises an enthusiastic and devoted team of scholars that closely collaborate in a flat organizational structure. Harmonious and productive collaboration and synergy are key to our success. At our Faculty, Institute, and Department, we have state-of-the-art equipment for sequencing and data analysis, light and electron microscopy, a large bioreactor facility as well as infrastructure for anaerobic microbiology, and facilities for biochemical, molecular, and physiological work.

Our mission is to conduct research at the forefront of microbial ecology and physiology with the main aim of understanding the diversity of microorganisms responsible for the biogeochemical cycling of nitrogen and carbon (methane). In close collaboration with other RIBES groups and external partners, we pay special attention to host-microbe interactions.

In addition, in close collaboration with stakeholders and (industrial) partners, we collaborate on the development of microbial applications in sustainable drinking water production and wastewater treatment systems to remove nitrogen, methane, and micropollutants. We focus on four research themes: 1. Nitrogen cycle microbiology, 2. Carbon/methane cycle microbiology, 3. Host-microbe interactions, and 4. Bioremediation. We collaborate on these four themes with our expertise in metabolomics, cell biology and biochemistry, environmental microbiology, biotechnology, microbial physiology, and bioinformatics.

Radboud University; At Radboud University, we aim to make an impact through our work. We achieve this by conducting groundbreaking research, providing high-quality education, offering excellent support, and fostering collaborations within and outside the university. In doing so, we contribute indispensably to a healthy, free world with equal opportunities for all.

To accomplish this, we need even more colleagues who, based on their expertise, are willing to search for answers. We advocate for an inclusive community and welcome employees with diverse backgrounds, cultures, and perspectives. Will you also contribute to making the world a little better? You have a part to play.

We offer

• It concerns an employment for 1.0 FTE.
• The gross starting salary amounts to €2,541 per month based on a 38-hour working week, and will increase to €3,247 in the fourth year (salary scale P).
• You will receive 8% holiday allowance and 8.3% end-of-year bonus.
• You will be employed for an initial period of 18 months, after which your performance will be evaluated. If the evaluation is positive, the contract will be extended by 2.5 years (4 year contract).
• You will be able to use our Dual Career and Family Care Services. Our Dual Career and Family Care Officer can assist you with family-related support, help your partner or spouse prepare for the local labour market, provide customized support in their search for employment and help your family settle in Nijmegen.
• Working for us means getting extra days off. In case of full-time employment, you can choose between 30 or 41 days of annual leave instead of the legally allotted 20.

Additional employment conditions; Work and science require good employment practices. This is reflected in Radboud University’s primary and secondary employment conditions. You can make arrangements for the best possible work-life balance with flexible working hours, various leave arrangements and working from home.

You are also able to compose part of your employment conditions yourself, for example, exchange income for extra leave days and receive a reimbursement for your sports subscription. And of course, we offer a good pension plan. You are given plenty of room and responsibility to develop your talents and realise your ambitions. Therefore, we provide various training and development schemes.

Would you like more information? For questions about the position, please contact Cornelia Welte, Associate Professor, at c.welte@science.ru.nl.

Practical information and applying

You can apply until 26 March 2024, exclusively using the button below. Kindly address your application to Cornelia Welte. Please fill in the application form and attach the following documents:

• A letter of motivation.
• Your CV.

The first round of interviews will take place on Wednesday 3 April. You would preferably begin employment on 1 September 2024. We can imagine you’re curious about our application procedure. It offers a rough outline of what you can expect during the application process, how we handle your personal data and how we deal with internal and external candidates.

Apply now Application deadline 26 March 2024