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3-year doctoral position in bioinformatics: Prediction of bacterial operons dedicated to glycan breakdown in marine Gammaproteobacteria for the discovery of novel CAZyme families (Funded by A*Midex) Aix-Marseille Université, France

3-year doctoral position in bioinformatics: Prediction of bacterial operons dedicated to glycan breakdown in marine Gammaproteobacteria for the discovery of novel CAZyme families (Funded by A*Midex) Aix-Marseille Université, France Location: Marseille, PROVENCE ALPES COTE D AZUR Job Type: FullTime Deadline: 31 Jul 2024 Job Information Organisation/Company Aix-Marseille Université Research Field Biological sciences » Biology Biological sciences » Other Computer science » Programming Computer science » Other Medical sciences » Other Researcher Profile First Stage Researcher (R1) Country France Application Deadline 31 Jul 2024 - 21:59 (UTC) Type of Contract Temporary Job Status Full-time Hours Per Week 38 Is the job funded through the EU Research Framework Programme? Not funded by an EU programme Is the Job related to staff position within a Research Infrastructure? No Offer Description RESEARCHER PROFILE:  PhD/ R1: First stage Researcher                   RESEARCH FIELD(S) AND DISCIPLINE

Post-doctoral fellow (M/F) in genetics and/or biochemistry of photosynthesis || Post doc vacancy in phycology || Algae academic vacancies

 Post Doc in Chloroplast Biology and Light-sensing in Microalgae Department

Post-doctoral fellow (M/F) in genetics and/or biochemistry of photosynthesis

We offer a post-doctoral position for up to 3 years in the scope of a National Research Agency (ANR)-funded project. We aim to understand the molecular events taking place upon Photosystem II damage. This is a multidisciplinary and collaborative program, and we are looking specifically for someone with experience in membrane protein biochemistry and/or genetics and mutagenesis. PhD in biology, chemistry, physics, and related topics is a requirement. There is no strict deadline for the application, but the earliest starting date is May 2023.

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General informations

Job title: Post-doctoral fellow (M/F) in genetics and/or biochemistry of photosynthesis

Reference: UMR7141-WOJNAW-001

Number of positions: 1

Place of work: PARIS 05

Date of publication: Thursday March 16, 2023

Type contract: Scientific CDD

Duration of contract: 30 months

Planned hiring date: May 1, 2023

Work shift: Full-time

Remuneration: 2890 - 4080 eur/month (gross; depending on experience)

Desired level of studies: Doctorate

Desired experience : 1 to 4 years

Section(s) CN: Integrative plant biology

Tasks

Photoinhibition is a process where light irreversibly damages Photosystem II, the crucial photosynthetic enzyme allowing water oxidation. The initial mechanism of the process is under debate, and the exact location of the damage site(s) is unknown. During the project, we aim to understand the molecular details of photodamage from a number of perspectives: as a function of the light color and intensity, using physiological, structural, and biochemical tools.

To understand the molecular details of photoinhibition, in particular the energy dissipation process occurring upon damage (1), potential role of cytochrome b559 in photoprotection, and locating the side of the initial damage, you will work with internal- and external collaborators. You will be primarily tasked with development of genetic and biochemical tools in Chlamydomonas reinhardtii and Thermosynechococcus vulcanus, with freedom to explore the nature of energy conversion in these species using functional approaches.

(1) Nawrocki, WJ, Liu, X., Raber, B., Hu, C., De Vitry, C., Bennett, DI, & Croce, R. (2021). Molecular origins of induction and loss of photoinhibition-related energy dissipation qI. Science advances, 7(52), eabj0055. doi.org/10.1126/sciadv.abj0055


Activities

- The candidate will develop tools for random mutagenesis of the chloroplast genome of Chlamydomonas (including conceptualization, execution, and troubleshooting of all aspects of the project; this work will be partly done with other geneticists in the hosting laboratory and with external collaborators) -

Culturing , scale-up, and development of purification techniques of membrane proteins from thermophilic cyanobacteria using standard, readily-available protocols. Characterization of the preparations using basic spectroscopic and biochemical methods.

- Functional measurements of photosynthesis in vivo and in vitro using spectroscopic techniques (no prior experience is required, and training will be provided)


SKILLS

Broad experience in at least two of the following techniques is expected:

- microbiology techniques, culture scale-up, bioreactors use

- (membrane) protein solubilization and purification using preparative chromatographic techniques or differential centrifugation

- generation of mutant lines in plants of eukaryotic microorganisms, cloning, gene sequence design, random mutagenesis

- time-resolved and steady-state fluorescence and absorption spectroscopy of photosynthetic samples or organisms


Work context

The UMR 7141 “Chloroplast Biology and Light-sensing in Microalgae” laboratory is located in the heart of Paris, in the Latin Quarter, a lively district with a student environment and firm place in the history of science. Our lab is dedicated to the study of light-driven processes (photosynthesis and photoperception) and chloroplast biology. The UMR 7141 addresses key questions on the biology, evolution and ecology of microalgae by focusing on different model systems and on ecologically-relevant phytoplankton. We put emphasis on a collaborative and interdisciplinary nature of the research, and use approaches of eco-physiology, biophysics, biochemistry, genomics, and genetics. The laboratory is inclusive and strives to accommodate candidates from all backgrounds.

In particular, you will work with a range of internal- and external collaborators in order to promote a two-way knowledge transfer. These include geneticists, biochemists, structural biologists, and spectroscopists, in the hosting lab, in Paris region, and internationally.

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